miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|296573053|gb|GW953897.1|GW953897 ACCAATTCAATCCACACCCAAAATCTCTCTGCAAGCAATTCACACCCATCTTCTTTCATTTTCATCTTCTTCTTCATCAT
CATCATCTTCTTCCTCTTCTAATTCTTCTTCTTCCATGGCTACTTGCGTAGATTCCTCAACCTCCTCCCCTTTTTCTCGG
AAGCCAAACGGGTCCCAAACTGATGATTGTTCCTATAACTACCTCAAATTCTGCCGACCCACTTTCTCCGATCGTGTTTC
CATTCCCAAGAACAAACCCCTGCATACACGCACGGTTGTTGAAGAGTCTGAGGCTAAGGTTGATGTTGACGATCGTGTTC
ATGATGAAGATGATGATGATGATGATGATCTATGGCGGAAGATGAAGGAAGAAGCGAAATCCGATGTGGAACAAGAACCT
ATTTTATCCAACTACTATTTCAGTTCAATCTTGTGCCACAAGTCTTTAGAAAGCGCGTTATCCAATCATCTTTCCAACAA
ATTATCCAGCTTGAATCTCAACAGCACCACTCTCGTTGATCTCTTCATGGGGATCTTGGAATCCGACGAAGAAATCATGG
CTTCCATGAAGGAAGATCTAAGAGCGGTTAAACAAAGAGACCCTGCTTGCATAAGCTACGTGCATTGCTTATTGAATTTC
AAAGGCTTCTTGGCTTGCCAGGCTCATAGGATCGCTCACAAGCTATGGCTCCAAGGAAGAAAAATTCTAGCCCTCTTGAT
TCAGAACCGCGGAATCCTTCTGGATCACGCGACT




Most similar to sp|Q42588|SAT1_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q42588|SAT1_ARATH Serine acetyltransferase 1, chloroplastic
           OS=Arabidopsis thaliana GN=SAT1 PE=1 SV=2
          Length = 314

 Score =  166 bits (420), Expect = 2e-40
 Identities = 101/231 (43%), Positives = 125/231 (54%), Gaps = 18/231 (7%)
 Frame = +2

Query: 116 MATCVDSSTSSPFSRKPNGSQTDDCSYNYLK-FCRPTFSDRVSIPKNKPLHTRTVVEESE 292
           MATC+D+        +   +Q DD  +  +K F RP FS       N+ +H   + ++ +
Sbjct: 1   MATCIDTC-------RTGNTQDDDSRFCCIKNFFRPGFS------VNRKIHHTQIEDDDD 47

Query: 293 AKXXXXXXXXXXXXXXXXXLWRKMKEEAKSDVEQEPILSNYYFSSILCHKSLEXXXXXXX 472
                              +W KM EEAKSDV+QEPILSNYY++SI  H+SLE       
Sbjct: 48  -------------------VWIKMLEEAKSDVKQEPILSNYYYASITSHRSLESALAHIL 88

Query: 473 XXXXXXXXXXXXXXVDLFMGILESDEEIMASMKEDLRAVKQRDPACISYVHCLLNFKGFL 652
                          +LF+ +LE   EI+ S K+DL AVK+RDPACISYVHC L FKGFL
Sbjct: 89  SVKLSNLNLPSNTLFELFISVLEESPEIIESTKQDLIAVKERDPACISYVHCFLGFKGFL 148

Query: 653 ACQAHRIAHKLWLQGRKILALLIQNR-----------------GILLDHAT 754
           ACQAHRIAH LW Q RKI+ALLIQNR                 GILLDHAT
Sbjct: 149 ACQAHRIAHTLWKQNRKIVALLIQNRVSESFAVDIHPGAKIGKGILLDHAT 199